Morning Glory Muffins

These wholesome morning glory muffins are my very favorite muffin variety. Filled with healthy ingredients like whole wheat flour, flax, apples, carrots, raisins, applesauce, and honey, these cinnamon-spiced muffins taste like apple cake, spice cake, and moist carrot cake combined. (And for breakfast!) There’s plenty of substitution suggestions here, so you can truly make them your own.

Do you remember when I first shared this recipe? It was back in 2015 and we’re revisiting it now because it continues to be a healthful breakfast favorite. I simplified the instructions and added plenty of substitutions so you can play around with the recipe. They’re my best morning glory muffins and here’s why you’ll love them!

These Morning Glory Muffins Are:

• Deliciously moist and spiced, just like pumpkin muffins
• Mega flavorful with hints of orange
• 100% whole wheat
• Healthier and wholesome
• Satisfying and hearty
• The perfect on-the-go snack
• Toddler-approved (victory dance!)

Plus, there’s no mixer required—just use a whisk—and they freeze beautifully!

One reader, Jo, commented: “The muffins turned out great! Sally’s guidance in the post and comments from other readers are spot on—the muffins are moist and flavorful and can really be tailored to suit individual preferences/tastes. Thanks again for another great recipe! ★★★★★“

Another reader, Liz, commented: “I have been making these every week for about four months now. I make my father muffins every Monday morning to last the week, and these are by far the very best I have ever made. They are nutty and the texture is so earthy. I absolutely love them. 100/10! Thank you! ★★★★★“

Another reader, Elizabeth, commented: “I always come back to this recipe for morning glory muffins. It’s so delicious and although it has a lot of ingredients, it’s a very easy recipe to follow. And worth it! So yummy! ★★★★★“

Are These Muffins Healthy?

The term healthy is, of course, all relative. But I would consider them on the healthier side, yes. They do contain wheat, some oil, and some refined sugar, but also wholesome ingredients like fresh fruit and vegetables, applesauce, flaxseed, honey, and whole wheat flour. Balance! I like to use some applesauce in place of some oil, just like how I replace some butter with unsweetened applesauce in my baked oatmeal. They are similar to my applesauce muffins, where the lighter ingredient replaces some fat while still keeping them extra moist and flavorful. (I don’t recommend replacing ALL the oil here—the morning glory muffins will taste rubbery.)

Think of these as my reader-loved harvest spice bread, but in muffin form. 🙂

How to Make Morning Glory Muffins

If you felt confident enough, you could probably make these with your eyes closed. I have the recipe memorized by now!

Making these morning glory muffins is as simple as combining all the dry ingredients in 1 bowl, combining all the wet ingredients in another bowl, then mixing everything together by hand. The batter is relatively thick and chunky because of all the flavorful add-ins, but this makes spooning into muffin liners pretty easy.

You need a shredder/grater for the carrots and apple. I always use my box grater, which doubles as a cheese grater. This tool is handy for zucchini bread, healthy apple muffins, zucchini muffins, carrot cake, and grating frozen butter for my scones.

18 Ingredients, But Don’t Worry!

I know the list of ingredients in the recipe below looks overwhelming, but most of them are regular kitchen staples like flour, salt, baking soda, cinnamon, eggs, brown sugar, and vanilla extract. For all of the extras, there are plenty of substitutions you can make.

The orange zest and ground flaxseed are totally optional, but I usually add both for extra flavor.

Ingredient Variations/Substitutions

Here’s a list of ways you can change the recipe based on your tastebuds. If using any of these substitutions, use the same exact amount of the ingredient you are replacing unless otherwise noted. For example, if you use coconut sugar instead of brown sugar, use 1/2 cup.

• Whole Wheat Flour: Use all-purpose flour if desired instead. (Or use a mix of both, like I do for peanut butter banana muffins.) I haven’t tested this muffin with gluten-free flour alternatives, but I would steer clear of almond, coconut, and oat flours. They won’t hold up to the moisture in the batter. (Try my blueberry almond power muffins instead!)
• Pecans: Leave them out or replace with dried cranberries, chopped walnuts or pistachios, sweetened or unsweetened shredded coconut, sunflower seeds, or more raisins.
• Brown Sugar: Coconut sugar is a dry unrefined sugar you can use in its place.
• Honey: Brown sugar, coconut sugar, or pure maple syrup.
• Oil: Melted butter. I don’t recommend leaving the fat out completely.
• Applesauce: If needed, replace with melted butter or more oil, apple butter, mashed banana, canned crushed pineapple, or pumpkin puree.
• Orange Zest: You can leave it out.
• Orange Juice: Delicious flavor! You can use pineapple juice or milk (dairy or nondairy) instead.
• Raisins: Leave them out or replace with dried cranberries, other chopped dried fruits, sweetened or unsweetened shredded coconut, chopped walnuts or pistachios, sunflower seeds, or more chopped pecans.
• Carrots: Feel free to replace with more shredded apple or even shredded zucchini.
• Apples: You can replace with shredded zucchini or more shredded carrot. I also love replacing the 1 cup of shredded apple with 2/3 cup canned crushed pineapple.

I have tested all of these options. Anything not listed I haven’t tested myself, so use caution! I will say that this is a very forgiving muffin recipe. Have fun with it!

PS: Try them with a swipe of homemade honey butter. What a treat!

More Healthful Baked Goods

• Whole Wheat Banana Bread
• Breakfast Cookies
• Chocolate Zucchini Bread
• Baked Apple Cinnamon Oatmeal Cups
• Chocolate Banana Muffins and Blueberry Banana Muffins
• Bran Muffins
• Vanilla Almond Granola or Pumpkin Granola
• Chocolate Chip Baked Oatmeal Cups

And for even more inspiration, see my complete list of 30+ healthy breakfast recipes.

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